FOG 1.5.7 Update Database Issue

Sebastian Roth

@chaonatic Ok, obviously I was totally on the wrong track. So you seem to have a different situation than what we saw in the other topic.

mariadb-client : Depends: mariadb-client-10.1 (>= 1:10.1.40-0ubuntu0.18.04.1) but it is not going to be installed

This error message is pretty interesting. I see that there are indeed two packages in Ubuntu one mariadb-client and one mariadb-client-10.1 - both the exact same version 10.1.40-0ubuntu0.18.04.1.

Doesn’t make sense to me. What happens if you run sudo apt-get install mariadb-client-10.1??

As well try sudo apt-get -f install - post output here.

chaonatic

@Sebastian-Roth said in FOG 1.5.7 Update Database Issue:

What happens if you run sudo apt-get install mariadb-client-10.1??

Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages were automatically installed and are no longer required:
  libevent-core-2.1-6 mysql-server-core-5.7
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  libconfig-inifiles-perl libjemalloc1 mariadb-client-core-10.1 mariadb-common
The following packages will be REMOVED:
  mysql-client mysql-client-5.7 mysql-client-core-5.7 mysql-server mysql-server-5.7
The following NEW packages will be installed:
  libconfig-inifiles-perl libjemalloc1 mariadb-client-10.1 mariadb-client-core-10.1 mariadb-common
0 upgraded, 5 newly installed, 5 to remove and 120 not upgraded.
Need to get 10.5 MB of archives.
After this operation, 44.0 MB disk space will be freed.
Do you want to continue? [Y/n] y
Get:1 http://us.archive.ubuntu.com/ubuntu bionic/main amd64 libconfig-inifiles-perl all 2.94-1 [40.4 kB]
Get:2 http://us.archive.ubuntu.com/ubuntu bionic-updates/universe amd64 mariadb-common all 1:10.1.40-0ubuntu0.18.04.1 [16.2 kB]
Get:3 http://us.archive.ubuntu.com/ubuntu bionic-updates/universe amd64 mariadb-client-core-10.1 amd64 1:10.1.40-0ubuntu0.18.04.1 [4,745 kB]
Get:4 http://us.archive.ubuntu.com/ubuntu bionic/universe amd64 libjemalloc1 amd64 3.6.0-11 [82.4 kB]
Get:5 http://us.archive.ubuntu.com/ubuntu bionic-updates/universe amd64 mariadb-client-10.1 amd64 1:10.1.40-0ubuntu0.18.04.1 [5,646 kB]
Fetched 10.5 MB in 3s (4,077 kB/s)
(Reading database ... 114360 files and directories currently installed.)
Removing mysql-client (5.7.26-0ubuntu0.18.04.1) ...
Removing mysql-server (5.7.26-0ubuntu0.18.04.1) ...
Removing mysql-server-5.7 (5.7.26-0ubuntu0.18.04.1) ...
Removing mysql-client-5.7 (5.7.26-0ubuntu0.18.04.1) ...
Removing mysql-client-core-5.7 (5.7.26-0ubuntu0.18.04.1) ...
Selecting previously unselected package libconfig-inifiles-perl.
(Reading database ... 114235 files and directories currently installed.)
Preparing to unpack .../libconfig-inifiles-perl_2.94-1_all.deb ...
Unpacking libconfig-inifiles-perl (2.94-1) ...
Selecting previously unselected package mariadb-common.
Preparing to unpack .../mariadb-common_1%3a10.1.40-0ubuntu0.18.04.1_all.deb ...
Unpacking mariadb-common (1:10.1.40-0ubuntu0.18.04.1) ...
Selecting previously unselected package mariadb-client-core-10.1.
Preparing to unpack .../mariadb-client-core-10.1_1%3a10.1.40-0ubuntu0.18.04.1_amd64.deb ...
Unpacking mariadb-client-core-10.1 (1:10.1.40-0ubuntu0.18.04.1) ...
Selecting previously unselected package libjemalloc1.
Preparing to unpack .../libjemalloc1_3.6.0-11_amd64.deb ...
Unpacking libjemalloc1 (3.6.0-11) ...
Selecting previously unselected package mariadb-client-10.1.
Preparing to unpack .../mariadb-client-10.1_1%3a10.1.40-0ubuntu0.18.04.1_amd64.deb ...
Unpacking mariadb-client-10.1 (1:10.1.40-0ubuntu0.18.04.1) ...
Setting up mariadb-common (1:10.1.40-0ubuntu0.18.04.1) ...
Setting up libconfig-inifiles-perl (2.94-1) ...
Setting up libjemalloc1 (3.6.0-11) ...
Setting up mariadb-client-core-10.1 (1:10.1.40-0ubuntu0.18.04.1) ...
Processing triggers for libc-bin (2.27-3ubuntu1) ...
Processing triggers for man-db (2.8.3-2ubuntu0.1) ...
Setting up mariadb-client-10.1 (1:10.1.40-0ubuntu0.18.04.1) ...

@Sebastian-Roth said in FOG 1.5.7 Update Database Issue:

As well try sudo apt-get -f install - post output here.

Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages were automatically installed and are no longer required:
  libevent-core-2.1-6 mysql-server-core-5.7
Use 'apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 120 not upgraded.

Sebastian Roth

@chaonatic Well that might have fixed it. But I am still not sure how you got into this situation or if this is something every Ubuntu user will face sooner or later?! As far as I know we have not seen this issue in the forums before.

So now I’d suggest you run sudo apt-get install mariadb-server-10.1, then change the packages=.... line in /opt/fog/.fogsettings (got the name wrong last time) back to mariadb-client mariadb-server and re-run the FOG installer script.

Keeping my fingers crossed this is not something we’ll see on every Ubuntu update now. Still can’t really see what’s going on here and why this is happening.

chaonatic

@Sebastian-Roth Well we’re definitely closer. The installer doesn’t fail when installing the databases but when you get to updating the database I’m still getting the Database connection unavailable error. Is this something to do with the blank vs not blank password (I mean, I’ve not yet set a DB pass)?

Sebastian Roth

@chaonatic Try to manually connect to the DB and see if that works: mysql -u root -p (just hit ENTER when it asks for a password if yours is empty)

As well you might want to read this one: https://forums.fogproject.org/topic/10006/ubuntu-is-fog-s-enemy

notverypunny

My apologies if this ends up as a duplicate post, tried to register and the confirmation email wasn’t getting through the work address… anyways

I’ve got the same issue: Running 1.5.6, trying to upgrade to 1.5.7 on Ubuntu 18.04.2.

Just tried manually installing the appropriate mariadb packages ( -common, -client and -server)

Here’s the problem:

Looks like the script isn’t set up to handle the migration from mysql 5.7 to mariadb given the exception that the package manager throws so it scraps the existing install.

Not sure what avenue you want to take with the script, but it looks like it’s going to break any existing ubuntu installs that are trying to go from mysql to mariadb.

Ping me if you need any more info, I’ll post back if if make any headway on my install.

notverypunny

So for anyone else running into this, or if the devs want to make this work in the script, here’s what I had to do to get this upgrade to work:

backup fog db
perform manual install of mariadb-common, mariadb-server and mariadb-client
reboot (services wouldn’t start and play nice, this was the simplest thing, should also be possible without restarting but I didn’t go there)
manually create fog db
restore fog db from backup
git pull and run bin/installfog.sh

knock wood things are now working as expected and the web interface seems snappier (could just be in my head).

Cheers

notverypunny

Aaand it looks like the same bug is present when updating storage nodes…

Similar process as far as a workaround goes, but without the backup and restore of the fog db as it isn’t part of the storage node.

Sebastian Roth

@notverypunny Really great you managed to work your way out of this. We had one other user some days ago who ran into the same issue - see here.

Not sure what avenue you want to take with the script, but it looks like it’s going to break any existing ubuntu installs that are trying to go from mysql to mariadb.

Not exactly true. Only if you move from a MySQL version 5.7 and earlier up to a newer version - I guess even if you update from MySQL 5.7 to 5.8 you’d run into this on any Ubuntu installation. Can you please let us know which version of Ubuntu you had before going to 18.04.2??

EDIT: Sorry, I was under the impression that Ubuntu 18.04 did use MySQL later than 5.7 already. I was wrong! Just figured that it was me who caused this in the first place when I added Debian 10 support! https://github.com/FOGProject/fogproject/commit/fddac44877ebabbf6f01d38d39361179bc6ec04d

Probably the only thing we can do within the installer is check if MySQL 5.7 is installed and tell people to manually follow the steps outlined. I would not fancy doing this in an automated way within the installer scripts.

notverypunny

@Sebastian-Roth

With 18.04 being a LTS, I expect that they’ll keep mysql alive and well in their repos, or provide migration / upgrade within the distro’s framework. As such, the project’s (fogproject that is) best track might be to keep existing 18.04 installs on mysql unless there’s a compelling reason to force the migration.

I’m lucky that my fog servers aren’t hosting anything else, but migrating databases if someone has other workloads on the same servers might not be a simple task.

Cheers

Sebastian Roth

@notverypunny said in FOG 1.5.7 Update Database Issue:

With 18.04 being a LTS, I expect that they’ll keep mysql alive and well in their repos, or provide migration / upgrade within the distro’s framework. As such, the project’s (fogproject that is) best track might be to keep existing 18.04 installs on mysql unless there’s a compelling reason to force the migration.

You are absolutely right here. I just setup a test environment and confirmed the commit posted below is actually causing the issue. Shouldn’t have done that in the first place. I’d happily revert that change back to what it was. But that would mean that you and some others will be reverted back to MySQL 5.7 on the next FOG release again. Very ugly I suppose. I will try to do some testing on what happens when I do this.

Sebastian Roth

@notverypunny In a test setup I was able to revert back to mysql 5.7 without much trouble. It seems to be able to use the database that mariadb used as well. The only issue I see is that the systemd service files seemed corrupted on my test system:

ls -lah /etc/systemd/system/ | grep -e maria -e mysql
lrwxrwxrwx  1 root root   35 Jul 22 20:10 mysqld.service -> /lib/systemd/system/mariadb.service
lrwxrwxrwx  1 root root   27 Jul 22 21:16 mysql.service -> /lib/systemd/system/mariadb

So I am still wondering if it’s a good idea to simply revert the change back to mysql-client mysql-server or if I need to add a check and if someone is on MariaDB already I just leave it alone?!?

notverypunny

@Sebastian-Roth said in FOG 1.5.7 Update Database Issue:

@notverypunny In a test setup I was able to revert back to mysql 5.7 without much trouble. It seems to be able to use the database that mariadb used as well. The only issue I see is that the systemd service files seemed corrupted on my test system:
ls -lah /etc/systemd/system/ | grep -e maria -e mysql
lrwxrwxrwx  1 root root   35 Jul 22 20:10 mysqld.service -> /lib/systemd/system/mariadb.service
lrwxrwxrwx  1 root root   27 Jul 22 21:16 mysql.service -> /lib/systemd/system/mariadb
So I am still wondering if it’s a good idea to simply revert the change back to mysql-client mysql-server or if I need to add a check and if someone is on MariaDB already I just leave it alone?!?

I would add a check, assuming that the logic isn’t too much to code. MariaDB is the better db at this point from what I can see and I should think that most people would prefer it, especially on a new install.

FlangeMonkey

Did you guys find a fix for this? I’ve just upgraded from 1.5.6 to 1.5.7 and the MariaDB service won’t start.

Thanks,

Sebastian Roth

@FlangeMonkey When releasing 1.5.7 we did not expect this to be an issue but it turned out that moving from MySQL 5.7 to MariaDB is not yet properly supported by Ubuntu. It doesn’t do a merge of the DB over to the new version but simply shuts down the old MySQL DB (usually find that in /var/lib/mysql-5.7/) and creates a fresh empty new one for MariaDB.

and the MariaDB service won’t start.

While this sounds a bit different I can still imagine this being a similar case. Please run sudo systemstl status mariadb and post output here. As well run ls -al /var/lib | grep mysql and post here.

Sebastian Roth

For all other users on Ubuntu out there. Please if you intend to update, use the current developer release 1.5.7.2 instead of plain 1.5.7 or wait till the next release is out. I just pushed out a fix that should address this current issue.

Arrowtron

@Sebastian-Roth

These are my results below:

mariadb.service - MariaDB 10.1.40 database server
  Loaded: loaded (/lib/systemd/system/mariadb.service; enabled; vendor preset: enabled)
  Active: active (running) since Mon 2019-08-05 16:50:56 AEST; 9min ago
    Docs: man:mysqld(8)
          https://mariadb.com/kb/en/library/systemd/
Main PID: 22323 (mysqld)
  Status: "Taking your SQL requests now..."
   Tasks: 34 (limit: 4419)
  CGroup: /system.slice/mariadb.service
          └─22323 /usr/sbin/mysqld

drwxr-xr-x  4 mysql     mysql     4096 Aug  5 16:50 mysql
drwx------  6 mysql     mysql     4096 Aug  5 15:25 mysql-5.7
drwx------  2 mysql     mysql     4096 Oct 28  2018 mysql-files
drwx------  2 mysql     mysql     4096 Mar  7  2017 mysql-keyring

updated from 1.5.6 to 1.5.7, get the same issue as everyone is describing
changed to dev branch 1.5.7.2 re-installed to see if it would fix it. still the same

I am able to get into MariaDB with mysql -u root -p

Welcome to the MariaDB monitor.  Commands end with ; or \g.
Your MariaDB connection id is 28366
Server version: 10.1.40-MariaDB-0ubuntu0.18.04.1 Ubuntu 18.04

Copyright (c) 2000, 2018, Oracle, MariaDB Corporation Ab and others.

Type 'help;' or '\h' for help. Type '\c' to clear the current input statement.

MariaDB [(none)]> Ctrl-C -- exit!
Aborted

I have backup’s here, but not quite sure how to restore them so the installation works

/home/fogDBbackups

Arrowtron

@Arrowtron

Update, just refreshed the page and loaded into this

clicked Install/update now and can now see the dashboard, looks very empty. I will look more into this tomorrow

Sebastian Roth

@Arrowtron Sorry to hear you have run into this as well. Unfortunately upgrading to 1.5.7.2 doesn’t help when you have gone to 1.5.7 already. We don’t do this as an automatic fix in the scripts as I find it too error prone to do in a scripted kind of way.

You should still have your “old” and valid database in /var/lib/mysql-5.7. Please follow the steps outlined below and I hope you should be right back up again:

sudo -i
mv /var/lib/mysql /var/lib/mysql-mariadb
apt-get remove mariadb-client mariadb-server
cp -a /var/lib/mysql-5.7 /var/lib/mysql
apt-get install mysql-client mysql-server
systemctl start mysql

Arrowtron

@Sebastian-Roth said in FOG 1.5.7 Update Database Issue:

/var/lib/mysql

Thanks for the reply,

I get this when i run the command
apt-get install mysql-client mysql-server

There is a MySQL server running, but we failed in our attempts to stop it.
Stop it yourself and try again!

Tried a few commands found doing a web search that didn’t help
apt --fix-broken install

Failed to stop mysql.service: Unit mysql.service not loaded.
invoke-rc.d: initscript mysql, action "stop" failed.
invoke-rc.d returned 5
There is a MySQL server running, but we failed in our attempts to stop it.
Stop it yourself and try again!
dpkg: error processing archive /var/cache/apt/archives/mysql-server-5.7_5.7.27-0ubuntu0.18.04.1_amd64.deb (--unpack):
 new mysql-server-5.7 package pre-installation script subprocess returned error exit status 1
Errors were encountered while processing:
 /var/cache/apt/archives/mysql-server-5.7_5.7.27-0ubuntu0.18.04.1_amd64.deb
E: Sub-process /usr/bin/dpkg returned an error code (1)

install mysql-client mysql-server
Reading package lists... Done
Building dependency tree
Reading state information... Done
mysql-client is already the newest version (5.7.27-0ubuntu0.18.04.1).
mysql-server is already the newest version (5.7.27-0ubuntu0.18.04.1).
You might want to run 'apt --fix-broken install' to correct these.
The following packages have unmet dependencies:
 mysql-server : Depends: mysql-server-5.7 but it is not going to be installed
E: Unmet dependencies. Try 'apt --fix-broken install' with no packages (or specify a solution).

=Update=
accidentally ran command sudo rm -rvf /var/lib
(thought i was typing in a new line, working too quick, was backing up mysql and purging etc) Going to start a fresh i think

FOG 1.5.7 Update Database Issue

264

11.6k

17.1k

154.6k