Since I am still kind of new to FOG I am not absolutely sure about FOG 0.32 but I suppose there is not too much of a difference when it comes to MBR…

FOG (1.2.0 an newer) does save the MBR from the uploading client at least with image type mps (single disk multiple partition) and mpa (all disks multiple partitions)! bcd(edit) has nothing to do with MBR! Those informations are saved in the first (100MB) partition of your disk, not in the MBR.

As FOG 0.32 is not under development I’d suggest you try setting up a test server with FOG 1.2.0 or even better current SVN version. If your issues still persist we are happy to jump in and fix things for you!